Purchasing all of the upgrades available for a Guild Ship requires 54 Flagship Plans: Frameworks. Each Framework required 50 x Flagship Plans = 1 x Dark Project MK-1. You can obtain Flagship Plans: Encryptions from Guild Conquest events, but to craft all of the plans would require the materials indicated in this table. NOTE: There are multiple ways to craft the Dark Project MK-1, this is just one example.
Minimum time required to produce enough Dark Project MK-1s for one Flagship Plans: Framework using nine companions = 1381 hrs 45 min (57.54 days)
Minimum time required to produce enough Dark Project MK-1s for 54 Flagship Plans: Framework using nine companions = 74,619 hrs (8.5125 years)
# of Mats Item
8100 Self-Perpetuating Power Cell
16,200 Alien Data Cube
16,200 Biometric Crystal Alloy
8100 Rakata Energy Node
43,200 Phobium
43,200 Bronzium
43,200 Chanlon
43,200 Nextor Crystal
43,200 Bondar Crystal
43,200 Eralam Crystal
43,200 Lost Artifact Fragment
43,200 Sacred Artifact Fragment
43,200 Prehistoric Artifact Fragment
27,000 Blue Goo
27,000 Medicinal Fluid
27,000 Genetic Anomaly
27,000 Hallucinogenic Compound
27,000 Plastoid
27,000 Plasteel
27,000 Lacqerous